Chengxin Zhang, Peter L Freddolino, and Yang Zhang. color in Jmol can be either a color name, such as 'green', or a color value placed in square brackets, expressed as either red-green-blue color triplets, for example 255,32,0, or as one hexidecimal number preceded by the letter x, for example xFF2000.
#Color terminus jmol code
This is the standard color code utilized in many textbooks. In the CPK color scheme, carbon is gray, hydrogen is white, oxygen is red, nitrogen is blue and sulfur is yellow. Confidently predicted terms are color coded by Cscore GO: This is one of the default display colors used in Jmol and was developed by Corey and Pauling and later improved by Kultin. ning) of the protein, and the red end cap represents the C-terminus (the end) of. The graph shows the predicted terms within the Gene Ontology hierachy for Cellular Component. your guide select a colored label that corresponds to the property of. Confidently predicted terms are color coded by Cscore GO: Hence the N > terminus of proteins and 5' terminus of nucleic acids are coloured red > and the C terminus of proteins and 3' terminus of nucleic acids are > drawn in blue. The graph shows the predicted terms within the Gene Ontology hierachy for Biological Process. Each chain is drawn as a smooth > spectrum from blue through green, yellow and orange to red. Negative regulation of cell cycle G1/S phase transitionĮstablishment of protein localization to plasma membraneĬellular response to peptide hormone stimulus It can also be a JavaScript color name, a RasMol color name, or a Jmol color name. Confidently predicted terms are color coded by Cscore GO: Objects can be custom colored in Jmol using the color (or colour) command: color object color or color scheme color is specified as decimal red, green, blue or hexadecimal x RRGGBB triplets. The graph shows the predicted terms within the Gene Ontology hierachy for Molecular Function.
#Color terminus jmol free
the polypeptide has a free amino-terminal group (the N-terminus) and the. Cscore GO values range in between where a higher value indicates a better confidence in predicting the function using the template. location of glutamic acid (colored with side-chain carboxyl oxygen atoms in. jmolScript: set echo top left color echo x0D0D99 echo DynDom.
#Color terminus jmol full
Histone-lysine N-methyltransferase activityĭownload full result of the above consensus prediction.Ĭlick the graph to show a high resolution version.Ĭscore GO is the confidence score of predicted GO terms. Transcription regulatory region DNA binding represents the coverage of the alignment by TM-align and is equal to the number of structurally aligned residues divided by length of the query protein. IDEN a is the percentage sequence identity in the structurally aligned region.Ĭov. RMSD a is the RMSD between residues that are structurally aligned by TM-align. while for the distance map and hydrogen bond network, a color scale. Ranking of proteins is based on TM-score of the structural alignment between the query structure and known structures in the PDB library. NXQ8IZE3 - SCY元 - Protein-associating with the carboxyl-terminal domain of ezrin. Query structure is shown in cartoon, while the structural analog is displayed using backbone trace. Top 10 structural analogs in PDB (as identified by
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